Protocols
SBCapSeq Protocol
a method for selective cloning of Sleeping Beauty transposon insertions using liquid capture hybridization and Ion Torrent semiconductor sequencing. Mann et al., Published online 03 Aug 2016 at Protocol Exchange. doi:10.1038/protex.2016.053
SBsplinkSeq Protocol
a semi-quantiative splinkerette PCR and acoustic shearing method for selective cloning of Sleeping Beauty transposon insertions using multiplex Illumina sequencing. Coming soon!
In Silico Lab Tools
Cancer Genomics Data Analysis Tools (public)
GitHub - jynewberg/sbcapseq: SB capture sequencing workflow.
GitHub - mikblack/wgsvar: Variant detection (SNV, InDel, CNV) in whole genome sequence (WGS) data.
Moffitt Community Tools (Moffitt network only)
Gene Symbol Set Search — a cross-species gene symbol conversion tool
CRISPRdb — human and mouse genome-wide CRISPR/Cas9 designs
Lab Member Tools (login required)
Mann Labs Cancer Genomics Resources
Sleeping Beauty Cancer Driver Database
Useful Web sites
Moffitt Cancer Center Links
Basic Science Research Division
Department of Molecular Oncology
Cancer Biology and Evolution Program
Melanoma Research Center of Excellence
Moffitt-USF Cancer Biology Ph.D. Program
University of South Florida Links
USF Biosafety Education and Training
Professional Societies & Organizations
AACR | American Association for Cancer Research
SMR | Society for Melanoma Research
SID | Society For Investigative Dermatology
TSCF | The Skin Cancer Foundation
NCI | National Cancer Institute
GSA | Genetics Society of America
FASEB | Federation of American Societies for Experimental Biology
AAAS | American Association for the Advancement of Science
Scientific Journals