- NNC (Nonparametric Nonlinear Correlation) - A Matlab toolbox for quantifying nonlinear correlation. Download the software as part of the supplements from our paper, Chen YA, Almeida JS, Richards AJ, Müller P, Carroll RJ, Rohrer B. A nonparametric approach to detect nonlinear correlation in gene expression. Journal of Computational and Graphical Statistics 2010, 19(3):552-568.
- SinCHet: a MATLAB GUI toolbox for Single Cell Heterogeneity analysis in cancer.The SinCHet software is freely available for non-profit academic use. You could download the source code here: SinCHet_source_code.zip or pre-compiled code here: SinCHet Compiled.zip. Installation details are included in the SinCHet user manual here.
- GMSImpute: An approach for imputing missing information in label-free mass spectrometry (MS) data. Our manuscript is currently under review (2018). The R package is available at CRAN: https://cran.r-project.org/web/packages/GMSimpute/index.html