1. NNC (Nonparametric Nonlinear Correlation): a Matlab toolbox for quantifying nonlinear correlation. Download the software as part of the supplements from our paper, Chen YA, Almeida JS, Richards AJ, Müller P, Carroll RJ, Rohrer B. A nonparametric approach to detect nonlinear correlation in gene expression. Journal of Computational and Graphical Statistics 2010, 19(3):552-568.
  2. SinCHet: a MATLAB GUI toolbox for Single Cell Heterogeneity analysis in cancer. Jiannong Li, Inna Smalley, Michael J. Schell, Keiran S. Smalley, Y. Ann Chen*. This is currently under revision. The SinCHet software is freely available for non-profit academic use.  You could download the source code here: or pre-compiled code here: SinCHet  Installation details are included in the SinCHet user manual here.